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Susitna-Watana Hydroelectric Project Document
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Title:
Water quality baseline monitoring, nutrients and chlorophyll a
SuWa 111
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Prepared by URS Corporation [and] Tetra Tech Inc.
AEA-identified category, if specified:
Briefing and Technical Documents
AEA-identified series, if specified:
Series (ARLIS-assigned report number):
Susitna-Watana Hydroelectric Project document number 111
Existing numbers on document:
Published by:
[Anchorage, Alaska : Alaska Energy Authority, 2012]
Date published:
May 18, 2012
Published for:
Prepared for Alaska Energy Authority
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Draft
Document type:
Technical memorandum
Pagination:
8 p.
Related work(s):
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Notes:
WQ-S2, Technical memorandum, V1.0
All reports in the Susitna-Watana Hydroelectric Project Document series include an ARLIS-
produced cover page and an ARLIS-assigned number for uniformity and citability. All reports
are posted online at http://www.arlis.org/resources/susitna-watana/
WQ-S2
Technical Memorandum
V1.0
Water Quality Baseline Monitoring:
Nutrients and Chlorophyll a
Prepared for: Prepared by:
Alaska Energy Authority URS/Tetra Tech
813 West Northern Lights Blvd. 1420 Fifth Avenue, Suite 550
Anchorage, AK 99503 Seattle, WA 98101
ALASKA ENERGY AUTHORITY
AEA
Disclaimer
This document contains information from Tetra Tech which may be confidential or
proprietary. Any unauthorized use of the information contained herein is strictly
prohibited and Tetra Tech shall not be liable for any use outside the intended and
approved purpose.
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1 BACKGROUND
The Alaska Energy Authority (AEA) is preparing a License Application that will be submitted to the
Federal Energy Regulatory Commission (FERC) for the Susitna-Watana Hydroelectric Project (Project).
The application will use the Integrated Licensing Process (ILP). The Project is located on the Susitna
River, at River Mile (RM) 184. The dam would be located within a steep-sided river valley approximately
15 miles upstream of Devil’s Canyon. Currently the plan is to construct a 700-foot high dam to impound a
39-mile long reservoir with a gross storage capacity of 4,334,000 acre-feet. The installed capacity of the
power plant would be approximately 600 MW.
Construction and operation of the Project as described in the Pre-application Document (PAD) will affect
flow regimes and water temperature and water quality downstream of the proposed dam site. Prior to
granting a license, the potential impacts of this project on the environment must be evaluated and
presented to FERC. This can be done by collecting information from the area, and using modeling to
project the impacts of the Dam on various physical parameters.
The collective goal of the water quality studies is to assess the effects of the proposed project operations
on water quality in the Susitna River basin and to identify and develop protection, mitigation, and
enhancement measures that can be implemented to minimize these effects.
A review of the objectives of the Baseline Water Quality Study are to:
Build upon and use, as appropriate, the historical water quality data available for the study area.
Continued collection of stream temperature and meteorological data.
Characterize surface water physical, chemical, and bacterial water quality conditions i n the
Susitna River within and downstream of the proposed project area.
Document baseline metals concentrations in sediment and fish tissue and compare to state
criteria.
Assess the potential for mercury methylation (i.e., bioavailable form) in the newly formed
reservoir and assess the potential for changes to mercury levels in fishes in the proposed
reservoir.
Conduct a pilot thermal imaging assessment of a portion of the Susitna River.
Nutrient monitoring and chlorophyll a (chl) analysis are primary components of the currently proposed
set of water quality parameters that will characterize conditions in the project area. Many of the proposed
water quality parameters have a direct effect on survival of aquatic life, whereas, nutrient are the building
blocks for primary production that affects food source and food base for all aquatic life in sloughs,
tributaries, and the mainstem Susitna River. The nutrient cycle is an important component of the aquatic
environment to understand and to manage so that impacts to aquatic communities is enhanced or
diminished.
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Available nutrient information in the Susitna drainage was reviewed in a Water Quality Gap Analysis
(URS 2011). Nutrient analysis (e.g., ortho-Phosphate and Nitrate-Nitrogen) was conducted at limited
tributary locations from the Susitna watershed in the 1980s. However, limits of detection as well as
quantity of observations were inadequate. In addition, TP (Total Phosphorus), NH3-N (Ammonia
Nitrogen), and direct TON (Total Organic Nitrogen) were not measured. Chlorophyll a was collected only
at the lower portion of the mainstem Susitna River (RM 25.8) and reported low concentrations at this site
prior to 2003.
AEA has requested that a thorough review of the importance of nutrient and chlorophyll a (chl)
characterization be determined through a water quality baseline monitoring program. Nutrients and chl
concentrations may be impacted by project operations and will have effects on primary and secondary
production that can be predicted based on experimental results from other examples. Collection of
nutrient and chl data in the Water Quality Baseline Monitoring Study (WQ-S2) will be used to confirm
initial hypotheses and for use in developing a Water Quality Model for both the reservoir and riverine
portion of the basin.
This technical review will address two issues:
1) Why chl and nutrients data should or should not be collected as part of the baseline water quality
study and included in the modeling analysis; and
2) What nutrient-related parameters will or will not be modeled, including data that will need to be
collected in order to be able to model nutrients, and a rationale for these decisions.
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2 ENVIRONMENTAL CONSIDERATIONS
In order to understand and predict potential changes to any aquatic environment, a basic understanding of
the fundamental drivers needs to be developed. Nutrients, light, water, and temperature are the
fundamental drivers for all aquatic life.
2.1 Sources and Effect on Production
Large impoundments usually increase nutrient concentrations in tail waters that often lead to increased
production and biomass of periphyton at substantial distances downstream. That can occur even in
oligotrophic (low productivity) waters, because reservoirs create dissolved oxygen (DO) deficits due to
thermal stratification. For example, Chester Morse Reservoir in the WA Cascades, which had a very low
total phosphorus (TP) inflow concentration of 4 µg/L, also had and an areal hypolimnetic oxygen deficit
(AHOD) of 175 mg/m² per day (Welch and Perkins, 1979). Hypolimnetic DO concentrations may or may
not reach anoxic conditions in impoundments with oligotrophic input waters, but if anoxia occurs then
soluble phosphorus (SRP) concentrations in tail waters can be high due to iron redox conditions in the
anoxic hypolimnion. For example, large mats and long streamers of Cladophora occurred downstream
from Tiber Reservoir on the Marias River in north central Montana in the 1960s following dam
construction (Welch, E.B., personal observation). That may have been due to the typical peak in TP
concentrations that occurs in newly constructed reservoirs and that lasts about a decade (Ney, 1996;
Stockner et al., 2000). The large biomasses of Cladophora have since disappeared (personal comm.
Montana Fisheries Manager).
Even if hypolimnetic DO does not reach anoxia in reservoirs, nitrogen (N) and phosphorus (P)
accumulate in the hypolimnion as plankton and incoming organic matter settle and decompose, which is
the cause for high AHODs. Also, inflows to reservoirs plunge and enter the metalimnion, depriving the
epilimnion of nutrients. This tends to short-circuit much of the inflow nutrients to the outflow (Welch et
al., 2011). Thus, tail waters can have elevated nutrient concentrations. Periphyton production is known to
increase in oligotrophic rivers with modest increases in SRP concentrations from 1 to 9 µg/L (Stockner
and Shortreed, 1978; Vancouver Island, BC) and 1 to 20 µg/L (Perrin et al., 1987; Thompson River, BC).
Filamentous green algae reached 500 mg chl/m² in a week in channels with SRP increased from 2 to 10-
15 µg/L (Horner et al., 1983, 1990; Walton et al., 1995; Anderson et al., 1999). Therefore, tailwaters from
even oligotrophic reservoirs are apt to have increased periphytic algal production.
2.2 Introduction and Transport in the Aquatic Environment
Impoundments on turbid rivers also settle and retain the incoming sediment load. As a result, the tail
waters are clear, which also produces conditions for higher rates of periphyton production from the
increased nutrient input from the reservoir hypolimnion. That was the case for Tiber Reservoir on the
naturally turbid Marias River, Montana (Gene Welch, 2012 personnel communication).
Large impoundments are also known to reduce productivity of oligotrophic river systems long-term by
sequestering nutrients entering from upstream. This oligotrophication process has reduced fisheries
production in reservoir/river systems in Sweden and British Columbia (Stockner and Milbrink, 1999;
Stockner et al., 2000; Metzinger, et al., 2007; and Anders and Ashley, 2007). The importance of nutrients
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to fisheries production in these systems has been demonstrated by their restoration through artificial
fertilization (Stockner and Milbrink, 1999; Milbrink and Holmgren, 1981; and Milbrink et al., 2008). The
Kokanee fishery of Kootenay Lake and Hugh Keenleyside dam on Arrow Lakes in BC are examples.
Production of migratory and resident fish in oligotrophic river systems of Alaska is known to be highly
dependent on the nutrient release from the decaying carcasses of returning adult salmon. Thus, an
impoundment imposed on river systems may affect both migratory and resident fisheries.
The above, briefly described problems of eutrophication and oligotrophication resulting from impounding
river systems warrant establishing a thorough database for nutrients and periphytic algae before and after
dam construction, as well as reservoir water column nutrient and chl concentrations afterward.
Phosphorus as TP and SRP, and N as nitrate and total N should be determined, as well as chl and alga
taxa in the river (periphyton) and water column during impoundment monitoring.
Without a baseline database for nutrient, chla, and algae, impacts to existing production within the Susitna
River and the Project area will remain undefined. Reasoning for potential changes in the aquatic life
community after the Project is completed will be unknown in terms of direct impacts to water quality.
Knowing pre- and post-Project nutrient concentrations and production within the river and Project Area
will allow AEA to determine and quantify impacts on aquatic life.
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3 MODELING NUTRIENTS:RIVERINE/RESERVOIR ENVIRONMENTS
Phosphorus is probably the key nutrient that determines algal productivity in a presumably oligotrophic
river system, like the Susitna. However, nitrate also can be an important determinant of algal growth rate
at times. Therefore, both nutrients should be incorporated into models that simulate river periphyton
production and biomass. Modeling of river periphyton has not been as successful as phytoplankton in
lakes and reservoirs. Complex models for both phytoplankton and periphyton contain submodels and
coefficients that have general relevancy, but which may not apply in specific water bodies.
For example, the CE-QUAL-W2 water quality model for reservoirs works well for temperature and DO,
but often poorly simulates algal and nutrient concentrations. Also, consensus experimental evidence and
understanding for algal dominance is lacking among limnologists, and this model includes that presumed
capability. While complex models are reliable for some variables, they are not for others. Therefore,
basic, reliable data are necessary, to assure, that model output is reasonable. Simple models may be
preferable for some purposes, such as predicting summer average epilimnion algal concentrations (i.e.,
chlorophyll) from TP loading and equilibrium TP concentrations, or more appropriate the bathtub model
for reservoirs with zones often marked by different nutrient and algal concentrations.
3.1 Problems Encountered Modeling Nutrients
Several issues associated with modeling nutrients are commonly encountered. These issues reinforce the
need to monitor nutrients both to provide accurate nutrient data and to help calibrate nutrient and
productivity modeling efforts. Among those issues are the following:
It is difficult to model biological interactions with nutrients; including uptake and release;
complex interactions between aquatic life, nutrients, and DO;
It is difficult to model food web interactions without information on primary productivity and
nutrient concentrations as well as secondary productivity information;
Various forms of nutrients, including soluble, particulate, bio-available and non-bioavailable,
make modeling difficult. Models will have to choose the form of each nutrient that best
represents system characteristics;
It is difficult to predict changes in anthropogenic sources; whether they increase or decrease with
time; and
Nutrient and chla are variable year-to-year depending on climate, weather, season, etc.
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4 RECOMMENDATIONS
The following table summarizes the rationale for collecting and monitoring of nutrient parameters,
companion water quality parameters, and chlorophyll for developing understanding in both reservoir and
riverine ecosystems.
Water Quality Parameter Rationale for Inclusion
Total Phosphorus Metabolic dynamics of aquatic ecosystems and
either driver or stress for entire food web
Soluble Reactive Phosphorus Available phosphorus that can sustain, enhance or
limit biological production
Total Nitrogen (Organic) Tracer for nitrogen cycling within the system
Nitrate-Nitrogen Available nitrogen form for sustaining or
enhancing aquatic life
Ammonia-Nitrogen Potentially available nitrogen source for aquatic
life, but also a stressor, plus it is a tracer for DO
interactions and organic decay
Algae (water column) Tracer for primary production both in terms of
location (backwater versus main stem) and how
active is periphyton scouring versus planktonic
production to secondary and tertiary production
Periphyton (substrate) Both primary production and community
structure integrated aquatic balance
Chlorophyll a Direct tracer of primary production and where
production is occurring
Phaeophyton Relative measure of photosynthetic activity
versus decline of primary producers
Discharge (flow) Removal, stability, and Residence time of
nutrients and biota
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5 REFERENCES
Anders, P.J. and K.I. Ashley. 2007. The Clear-water Paradox of Aquatic Ecosystem Restoration. Fisheries
Vol. 32(3). 125-128.
Anderson, E.L., E.B. Welch, J.M. Jacoby, G.M. Schimek, and R.R. Horner. 1999. Periphyton removal
related to phosphorus and grazer biomass level. Freshwater Biology 41: 633-651.
Horner, R.R., E.B. Welch, and R.B. Veenstra. 1983. Development of nuisance periphytic algae in
laboratory streams in relation to enrichment and velocity, in Periphyton of Freshwater Ecosystems (ed.
R.G. Wetzel), Dev. Hydrobiol., 17: 121-134.
Horner, R.R, E.B. Welch, M.R. Seeley, and J.M. Jacoby. 1990. Responses of periphyton to changes in
current velocity, suspended sediment and phosphorus concentration. Freshwater Biology 24: 215-232.
Milbrink, G., 1977. On the limnology of two alkaline lakes (Nakuru and Naivasha) in the East
Rift Valley System in Kenya. Int. Revue ges. Hydrobiol., 62(1):1-17.
Milbrink, G., and S. Holmgren. 1981. Addition of artificial fertilizers as a means of reducing negative
effects of ‘‘oligotrophication’’ in lakes after impoundment. Swedish Board of Fisheries, Institute of
Freshwater Research, Report 59.
Milbrink, G., E. Petersson and S. Holmgren. 2008. Long-term effects of nutrient enrichment on the
condition and size-structure of an alpine brown trout population. Environ. Biol. Fish. 81:157-170.
Ney, J.J. 1996. Oligotrophication and its discontents: effects of reduced nutrient loading on reservoir
fisheries. American Fisheries Society Symposium 16: 285-295.
Stockner, J. G., and G. Milbrink, editors. 1999. Restoration of fisheries by enrichment of aquatic
ecosystems. International Workshop at Uppsala University, Sweden, 30 March-1 April 1998. Uppsala
University, Uppsala, Sweden.
Stockner, J. G., E. Rydin, and P. Hyehstrand. 2000. Cultural oligotrophication: causes and consequences
for fisheries resources. Fisheries 25(5):7-14.
Walton, S.P., E.B. Welch, and R.R. Horner. 1995. Stream periphyton responses to grazing and changes in
phosphorus concentration. Hydrobiologia 302: 31-46.
Welch, E.B. 2012. Personnel Communication.
Welch, E.B. and M.A. Perkins. 1979. Oxygen deficit-phosphorus leading in lakes. Journal of the Water
Pollution Control Federation 51:2823-2828.
Welch, E.B., G.D. Cooke, and J.A. Jones. 2011. DO-temperature habitat loss due to eutrophication in
Tenkiller Reservoir Oklahoma, USA. Land and Reservoir Management 27: 271-285.
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URS. 2011. AEA Susitna Water Quality and Sediment Transport Data Gap Analysis Report. Prepared by
Tetra Tech, URS, and Arctic Hydrologic Consultants. Anchorage, Alaska. 62p.+Appendixes.