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Susitna-Watana Hydroelectric Project Document
ARLIS Uniform Cover Page
Title:
Aquatic resources study within the access alignment, transmission
alignment, and construction area, Study plan Section 9.13 : Final study
plan SuWa 200
Author(s) – Personal:
Author(s) – Corporate:
Alaska Energy Authority
AEA-identified category, if specified:
Final study plan
AEA-identified series, if specified:
Series (ARLIS-assigned report number):
Susitna-Watana Hydroelectric Project document number 200
Existing numbers on document:
Published by:
[Anchorage : Alaska Energy Authority, 2013]
Date published:
July 2013
Published for:
Date or date range of report:
Volume and/or Part numbers:
Study plan Section 9.13
Final or Draft status, as indicated:
Document type:
Pagination:
17 p.
Related work(s):
Pages added/changed by ARLIS:
Notes:
All reports in the Susitna-Watana Hydroelectric Project Document series include an ARLIS-
produced cover page and an ARLIS-assigned number for uniformity and citability. All reports
are posted online at http://www.arlis.org/resources/susitna-watana/
Susitna-Watana Hydroelectric Project
(FERC No. 14241)
Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area
Study Plan Section 9.13
Final Study Plan
Alaska Energy Authority
July 2013
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-1 July 2013
9.13. Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area
On December 14, 2012, Alaska Energy Authority (AEA) filed with the Federal Energy
Regulatory Commission (FERC or Commission) its Revised Study Plan (RSP), which included
58 individual study plans (AEA 2012). Section 9.13 of the RSP described the Aquatic Resources
Study for Project areas within the access alignment, transmission alignment, and construction
area. Construction and operation of the Project could affect aquatic habitat where Project access
roads, transmission lines, airports, and construction areas cross or encroach on streams and other
water bodies. This section focuses on providing a baseline description of aquatic habitats and
fish species present in the vicinity of Project-related infrastructure in order to provide a basis for
assessing potential Project effects and to assist in developing plans for protection, mitigation, and
enhancement (PM&E) measures, including resource management and monitoring plans. RSP
9.13 provided goals, objectives, and proposed methods for this aquatic resources study.
On February 1, 2013, FERC staff issued its study plan determination (February 1 SPD) for 44 of
the 58 studies, approving 31 studies as filed and 13 with modifications. RSP Section 9.13 was
one of the 31 studies approved with no modifications. As such, in finalizing and issuing Final
Study Plan Section 9.13, AEA has made no modifications to this study from its Revised Study
Plan.
9.13.1. General Description of the Proposed Study
Construction and operation of facilities associated with the proposed Project will require both
temporary and permanent infrastructure including road, railroad siding, airstrip, transmission
lines, and construction camps and staging areas (ADOT&PF 2012). Construction and operation
of the Project could affect aquatic habitat where Project access roads, transmission lines, airports,
and construction areas cross or encroach on streams and other water bodies.1 A baseline
description of aquatic habitats and fish species present in the vicinity of Project-related
infrastructure is needed to provide a basis for assessing potential Project effects and to assist in
developing plans for protection, mitigation, and enhancement (PM&E) measures, including
resource management and monitoring plans.
Study Goals and Objectives
The goals of this study are as follows: (1) characterize baseline condition of the aquatic habitat
and fish species composition in the vicinity of the proposed Project’s infrastructure including
access roads, transmission lines, airports, construction areas, and operation facilities; (2) evaluate
the potential for the proposed Project’s infrastructure to affect these resources; (3) provide data
for determining the least environmentally damaging alternative for purposes of U.S. Army Corps
of Engineers (USACE) issuance of a dredge and fill permit under Section 404(c) of the Clean
Water Act; and (4) provide data for developing any necessary PM&E measures, which may
include resource management and monitoring plans.
1 Streams would be crossed using standard Alaska ADOT&PF bridge design, or using culverts, as appropriate. AEA
anticipates that construction would be completed using standard methods and would rely on local borrow
pits/quarries within the corridor for fill and surfacing (AEA 2011).
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-2 July 2013
Specific study objectives are as follows:
1. Characterize the aquatic habitats and fish assemblages at potential stream crossings
within a 200-meter (650-foot) buffer zone along proposed access road and transmission
line alignments.
2. Describe aquatic habitats and species present within the construction area for the dam and
related hydropower facilities.
9.13.2. Existing Information and Need for Additional Information
Alaska Energy Authority (AEA) will evaluate up to three possible access alternatives for road
and transmission lines. The Denali Corridor would run north from the Watana Dam site and
connect to the Denali Highway by road (Figure 9.13-1). Within this corridor, the transmission
lines would generally parallel the road to the Denali Highway and would run west along the
existing Denali Highway to connect to the Anchorage–Fairbanks Intertie. The Chulitna Corridor
would accommodate east–west running transmission lines and a road along the north side of the
Susitna River that would connect to the Anchorage–Fairbanks Intertie and the Alaska Railroad
near the Chulitna station. The Gold Creek Corridor would also accommodate an east–west
access and transmission corridor but would run along the south side of the Susitna River (Figure
9.13-1).
Fisheries and aquatic habitat work specific to each of the proposed transportation access and
transmission line alignments has not been conducted since the 1980s. Because these data were
collected a number of years ago, it will be useful for corridor planning to have updated data.
Given the 30-year timespan, it is possible that shifts in fish species distribution and range
expansion may have occurred since the historic data were collected. Thus, a description of
current aquatic habitats and fish species in the vicinity of Project-related infrastructure is needed
to inform Project design, impact assessment, and development of potential PM&E measures, as
necessary.
The most comprehensive fish and aquatic habitat dataset relevant to this study was generated
during the 1980s. In 1983, the Alaska Department of Fish and Game (ADF&G) established
study sites to characterize aquatic habitat and document fish species presence at 42 stream
crossings within the then-proposed access and transmission corridors. Study sites were
established at 22 stream crossing sites from the Denali Highway to the Watana Dam site, 14 sites
along the Devils Canyon access corridor, and 6 sites along the then-proposed Gold Creek rail
portion of the corridor (Schmidt et al. 1984). The 22 crossing sites along the then-proposed
Denali-North (Seattle Creek) alignment correspond reasonably well to the present-day Denali
Corridor crossing sites. The 14 study sites along the then-proposed Devils Canyon access, which
extended from corridor mile 38 of the old Denali Corridor to Devils Creek dam site to the old
Gold Creek intertie, relate fairly well to a portion of the present-day Chulitna Corridor. The 6
sites along the old Gold Creek intertie correspond to some of the crossings associated with the
western portion of the present day Gold Creek Corridor.
In addition to the Access and Transmission Corridor Aquatic Investigations (July–October 1983)
report (Schmidt et al. 1984), relevant existing information sources include fish species presence
and aquatic habitat data collected and maintained under the Alaska Freshwater Fish Inventory
(AFFI) program (e.g., Buckwalter 2011) and anadromous fish presence data maintained by the
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-3 July 2013
ADF&G Anadromous Waters Catalog (AWC; ADF&G 2011). The Aquatic Resources Data Gap
Analysis (ARDGA; HDR 2011) and AEA’s Pre-Application Document (PAD) (AEA 2011)
summarized existing information and identified data gaps for aquatic conditions and fish species.
The Alaska Department of Transportation and Public Facilities (ADOT&PF) recently conducted
a transportation access study to evaluate access corridors to the Watana Dam site (ADOT&PF
2012). In 2011, the ADOT&PF study team used a helicopter to fly over each access route and
identified each stream crossing (those previously mapped and those that did not appear on the
U.S. Geological Survey [USGS] map; ADOT&PF 2012). The ADOT&PF team landed at
selected stream crossings and estimated channel width and incision depth, and where possible,
identified more efficient crossing locations (ADOT&PF 2012). Based on the 2011 field
reconnaissance coupled with review of existing aquatic resource data, the ADOT&PF identified
the number of stream crossings that would be necessary under each alternative. The ADOT&PF
considered the number of stream crossings and associated fish passage requirements as part of
the screening criteria evaluation (ADOT&PF 2012).
The access and transmission line corridors for the proposed Project have not been finalized.
Historic data on fish species presence and aquatic habitat are available for many of the streams
that would be crossed; however, an updated characterization study is needed to assess current
conditions and to ensure fish presence is accounted for in all streams and water bodies within the
vicinity of the proposed crossing locations. Additionally, a more comprehensive and
systematically-collected aquatic habitat dataset is necessary to characterize baseline conditions
prior to potential development.
A brief summary of the existing information for each of the proposed access/transmission line
corridors is presented below.
9.13.2.1. Denali Corridor
The current Denali access alignment corridor (referred to by ADOT&PF as the Seattle Creek
[North] alignment) would require approximately 15 stream crossings from the Watana Dam site
to the Denali Highway (ADOT&PF 2012). The Denali Corridor alignment would cross streams
within both the Nenana River and Susitna River watersheds. Seattle Creek and Brushkana Creek
are the two major drainages crossed within the Nenana River watershed. The Denali Corridor
would require eight crossings of tributaries within the Nenana River basin and two crossings in
the Susitna River watershed. Deadman Creek is the major stream crossed within the Susitna
River watershed.
In the 1980s, biologists conducted fish presence surveys in the vicinity of 10 of these 15 stream
crossing sites and recorded general habitat and water quality conditions (Schmidt et al. 1984).
Resident fish species were confirmed to be present in the vicinity of nine proposed crossing
locations, three sites with intermittent flow were deemed unsuitable for fish use and were not
sampled for fish presence, and one site had no fish present (Schmidt et al. 1984).
Schmidt et al. (1984) documented that Dolly Varden, slimy sculpin, and Arctic grayling were
relatively widespread along the Denali Corridor. Sculpin were captured near nine of the proposed
crossing locations and Dolly Varden and Arctic grayling near six of the proposed crossings. No
anadromous fish habitat was documented during these surveys. These streams will be re-
surveyed in 2013 along with a subset of streams that would be crossed by the transmission line
along the Denali Highway.
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-4 July 2013
The Denali Corridor is the only study area with existing infrastructure. Under this alignment
corridor, upgrades to the existing Denali Highway would be necessary to accommodate Project
traffic (ADF&G 2012). ADF&G has indicated that a comprehensive survey of Denali Highway
stream crossings would be required if the Denali Corridor is chosen (ADF&G 2012). From 2006
to 2007, ADF&G conducted a Level 1 assessment of stream crossings for central and Interior
Alaska road systems including the Denali Highway (O’Doherty 2010). The ADF&G
methodology followed a standardized protocol focusing on juvenile salmonid fish passage.
Culverts were surveyed for type, size, slope, outfall height, and other physical parameters. Of
the 1,591 culverted stream crossings evaluated throughout the state, the Denali Highway
crossings were classified among those “having the greatest potential to pass juvenile fish”
(O’Doherty 2010). If the Denali Corridor is chosen, all crossings will be re-inventoried and
surveyed to the ADF&G Level 1 standard. This survey work will be completed in 2014.
9.13.2.2. Chulitna Corridor
The current Chulitna Corridor alignment (referred to by ADOT&PF as the Hurricane [West]
alignment) would require approximately 36 stream crossings. All streams and water bodies that
would be intersected by this corridor drain into the Susitna River watershed. The majority of
streams that would be crossed by this alignment are smaller tributary streams. However, this
alignment would also cross a number of larger streams, including Pass Creek, the Indian River,
and Thoroughfare, Portage, Devil, Tsusena, and Deadman creeks.
The Chulitna Corridor alignment would cross several known anadromous fish streams (ADF&G
2011). A crossing of Granite Creek, west of the Parks Highway, would facilitate access to the
existing railroad line. The ADF&G AWC lists Granite Creek (AWC No. 247-41-10200-2381-
3600) as anadromous fish habitat (ADF&G 2011). Bader and Sinnott (1989) captured juvenile
Chinook and coho salmon at a point downstream of the proposed Granite Creek crossing
(ADF&G 2011; Bader and Sinnott 1989), and no passage barriers have been identified in that
creek between the fish capture site and the proposed crossing.
Pass Creek, located southwest of the Chulitna route crossing, is specified as an anadromous fish
stream in the AWC (AWC No. 247-41-10200-2381-3236) and is designated to provide habitat
for all five species of Pacific salmon (ADF&G 2011). However, a waterfall located downstream
of the Chulitna alignment crossing presents a barrier to upstream migration of anadromous fish
(ADF&G 2011). The Chulitna alignment intersects nine small, unnamed tributaries to Pass
Creek; however, only limited electrofishing assessment data are available and indicate the
presence of Dolly Varden and slimy sculpin at the one location sampled (Buckwalter et al.
2003).
Three additional streams—Indian River (AWC No. 247-41-10200-2551), Thoroughfare Creek
(AWC No. 247-41-10200-2582-3201), and Portage Creek (AWC No. 247-41-1020-2585)—have
been cataloged (ADF&G 2011) as providing habitat for anadromous fish at the potential crossing
sites.
The Chulitna alignment would cross ten small, unnamed tributaries of Portage Creek, the
mainstem of Devils Creek and three of its tributaries, seven smaller tributaries to the Upper
Susitna River (in the Swimming Bear drainages; Schmidt et al. 1984), as well as Tsusena Creek
and two of its tributaries. Fish presence sampling has not been conducted in many of these
tributary streams, and passage barriers have not been identified. The presence of barriers on
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-5 July 2013
some of the Susitna River tributaries above Devils Canyon is being documented as part of the
2012 Upper Susitna River Fish Distribution and Habitat Study.
9.13.2.3. Gold Creek Corridor
The current road and transmission line alignment within the Gold Creek Corridor would require
approximately 23 stream crossings (ADOT&PF 2012). All streams and water bodies that would
be intersected by this alignment drain into the Susitna River watershed. The major streams that
would be crossed include Gold Creek, Fog Creek, and Cheechako Creek. Smaller streams that
would be crossed include tributaries to Prairee and Jack Long creeks and a number of unnamed
tributaries to the Susitna River.
The Susitna River (including side channels and sloughs), Fog Creek, Cheechako Creek, and Gold
Creek are known to provide habitat for anadromous Pacific salmon (ADF&G 2011). Many of
the streams that would be crossed are unnamed tributaries of the Susitna River. Fish data are
available for a number of streams that would be crossed. However, much of the available fish
data were collected downstream from (i.e., not in the direct vicinity of) the proposed crossing
sites (Delaney et al.1981; ADF&G 2011; Schmidt et al. 1984). A total of 8 of the 23 streams
intersected by the southern alignment are known to provide habitat for anadromous fish
downstream of the proposed crossing sites (ADF&G 1981, 2011; Schmidt et al. 1984).
9.13.3. Study Area
The access corridor study area includes streams and water bodies within both the Susitna River
and Tanana River watersheds (Figure 9.13-1). The Denali alignment would cross streams within
both the Nenana River (a tributary of the Tanana River) and Susitna River watersheds. Seattle
Creek and Brushkana Creek are the two major drainages that would be crossed within the
Nenana River watershed. Deadman Creek is the major stream that would be crossed within the
Susitna River watershed. All streams and water bodies that would be intersected by the Chulitna
and Gold Creek alignments drain into the Susitna River watershed.
The study area will include the aquatic habitats (streams and lakes) in the vicinity of both
temporary and permanent Project-related infrastructure including access roads, transmission
lines, airports, and construction areas. AEA will establish study sites in aquatic habitats within a
200-meter (650-foot) buffer zone along each access alignment corridor, in the vicinity of the
potential airport and hydropower facility construction areas. Figure 9.13-1 shows the streams
and lakes (based on the most current hydrography layer) within the three access corridors.
The study area will be adjusted as refinements are made to the proposed Project features and
specific alignment routes. AEA expects that the initial 2013 sampling effort will occur over a
broad area and that collection of more detailed information within refined alignments will be
necessary during subsequent sampling efforts in 2014.
9.13.4. Study Methods
9.13.4.1. Synthesis of Existing Information
Historic data for aquatic resources sampling reported in Schmidt et al. 1984 (and associated data
to the extent possible), the AWC, and AFFI will be incorporated into a geospatial database for
the proposed access alignments. AEA will consult with the agencies and will identify gaps in the
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-6 July 2013
historic aquatic habitat and fish species presence database to prioritize the initial 2013 sampling
efforts and refine the overall field sampling approach. Based on the existing data review, the
overall priority for data collection will be as follows: (1) sites not previously surveyed; (2) sites
with no previously documented fish presence; (3) sites with fish presence documented
downstream of the potential crossing location; and (4) sites with fish presence documented
upstream of the potential crossing location. In this study, AEA does not propose to survey for
fish presence in streams where the known anadromous fish distribution extends upstream of a
proposed crossing location, but aquatic habitat surveys may be conducted in these locations.
At the onset of this study, locations where aquatic habitat and fish species presence data have
been previously collected in the vicinity of the proposed access corridors will be identified.
AEA will code streams and water bodies by fish presence (e.g., anadromous fish, resident fish,
no fish captured or observed) and will identify streams and water bodies for which no data
records were found. For areas where no sampling data are available, the team will review
connectivity to adjacent streams and water bodies (e.g., where fish/habitat data are available) to
aid in field sample planning.
AEA initiated studies in 2012 to begin the characterization of fish communities, fish distribution,
and aquatic habitat throughout the Susitna River. Studies will continue and expand in 2013–
2014. AEA also began a study to document the presence of fish passage barriers in the Upper
Susitna River, with a focus on streams within the proposed inundation zone. In 2013 and 2014,
AEA will expand these efforts to identify the presence of existing fish passage barriers to
tributaries downstream of the proposed Watana Dam site. Data collected as part of the fish
distribution and aquatic habitat mapping studies will be used to supplement data collection and
analysis specific to this study, where appropriate.
9.13.4.2. Field Data Collection
Study sites will be established at proposed crossing sites in streams along the three potential
access and transmission corridors and within the vicinity of construction areas and potential
airport locations. To account for potential alignment changes or refinements, sampling will
occur within a 200-meter (650-foot) buffer along each alignment corridor in 2013. Study sites
will also be established on lakes that fall within the proposed access corridors and in the vicinity
of construction locations.
Each alignment will be flown to verify that all streams and/or water bodies within 200 meters
(650 feet) of the access and transmission corridors and construction areas are included in the
field study. The field team will record the location of each area to be sampled with a global
positioning system (GPS) unit. The field team will also take photographs to document channel
conditions during each field data collection effort. The team will sample for fish presence and
record aquatic habitat parameters at each study site, as described below.
AEA expects that the initial fisheries and aquatic habitat data collected for the Project in 2012
and 2013 will be assessed during the facilities alternatives analysis and will be used to refine
Project design. AEA anticipates that the collection of additional site-specific data may be
necessary in 2014 to address any newly identified crossing locations and/or fill data gaps.
Final Study Plan Aquatic Resources Study within the Access Alignment,
Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
FERC Project No. 14241 Page 9.13-7 July 2013
9.13.4.2.1 Aquatic Habitat Data Collection
The field team will record aquatic habitat characteristics in the vicinity of each potential crossing
site. At stream crossing locations, AEA will characterize habitat units to the mesohabitat level in
accordance with the channel typing and aquatic habitat classification system currently being
developed for the Project by the Fish and Aquatic TWG, as presented in Section 9.9. Habitat
characterization will be based on a modified version of the USFS Aquatic Habitat Survey
Protocol (2001). Habitat units encountered will be typed, and parameters that describe the
current condition of the habitat unit will be measured. If sections of stream contain two or more
different habitat units they will be delineated to the mesohabitat level, denoting a primary and
secondary unit, and recorded correspondingly. Field data collection methods will be consistent
with those identified for the ground-based surveys described in Section 9.9. The habitat survey
for each stream will be conducted by a two-person field team. A GPS point will be used to
identify the upstream boundary of each mesohabitat unit. For pools, maximum depth and pool
crest depth will be measured with a stadia rod and recorded in meters, where possible. Wetted
and bankfull widths and the lengths of each mesohabitat unit will be measured with a tape or
laser range finder and recorded in meters. Percent substrate composition will be estimated by
visual identification based on USFS (2001) classifications. Slope measurements representative of
the potential crossing location within the 200-meter corridor will will also be recorded.
Large woody debris (LWD) observed will be counted for each habitat unit. For a piece of wood
to be considered LWD, it must be at least 0.1 meter (4 inches) in diameter, and at least 1.0 meter
(39 inches) of the LWD must be below the water’s surface at bankfull flow (USFS 2001).
The amount of undercut bank (UCB) on each side of the stream will be measured to the nearest
meter for each habitat unit. A bank will be considered undercut if the undercut is greater than or
equal to 0.3 meter (12 inches) incised into the bank and greater than 1.0 meter (39 inches) long.
If, at bankfull stage, the bank would be considered undercut, then it will be measured even if it is
above the current surface of the water (USFS 2001).
The linear distance of stream habitat characterized at the mesohabitat unit level will be a function
of wetted channel width (40 times the wetted width up to a maximum of 400 meters [1,300
feet]). AEA developed a systematic approach to characterize lake habitats in the
Characterization and Mapping of Aquatic Habitats Study (Section 9.9); this study will utilize
results as they become available in 2013.
As Project features are refined, additional site-specific data will be recorded along transects in
the close vicinity (in accordance with the Habitat Characterization Protocol) of the anticipated
crossing location. Data recorded along transects will include but not be limited to channel bed
width, wetted channel width, several water depth measurements across each transect (where
feasible), gradient 2, Rosgen channel type (Rosgen 1994), and water quality field parameters.
AEA anticipates the need for such parameters to meet permitting requirements (e.g., ADF&G
Fish Habitat Title 16 Permit).
Several water quality parameters that affect aquatic life will be measured during the aquatic
habitat assessment, including field measurements of surface water temperature, pH, dissolved
2 One study considered stream width and gradient as two of the most influential factors that affected species richness
among different habitat variables (Grenouillet et al. 2004).
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oxygen (DO), and specific conductivity. Alaska Department of Environmental Conservation
(ADEC) water quality criteria for all applicable water use classes and subclasses will be used to
evaluate measured parameters. Water quality sampling will be conducted in coordination with
water quality sampling protocols currently being developed for the Project.
9.13.4.2.2 Fish Data Collection
The goal of this task is to characterize fish assemblages in the vicinity of potential stream
crossings. Therefore, sampling will not be conducted throughout the entire length of the stream
but instead within close proximity to crossing sites (see below). Species richness in stream fish
assemblages is related to both environmental conditions within the stream and stream spatial
position within the drainage (Grenouillet et al. 2004). In an effort to characterize species
composition at each stream crossing, the field team will establish segments of stream habitat to
sample for fish presence at each crossing site. Streams will be sampled as described below. As
requested by ADF&G during Fish and Aquatic TWG meetings, sampled water body crossings
where no fish are found will be sampled again during a different season to adequately assess fish
presence.
The field team will use backpack electrofishing gear (Smith-Root LR-24 or similar) as the
primary capture method to inventory streams for fish presence. Single-pass electrofishing was
selected as the primary fish capture method because it is considered to be the most effective
(Barbour et al. 1999; Simon and Sanders 1999; Flotemersch and Blocksom 2005) and widely
applied (Hughes et al. 2002) method used in streams and rivers. Electrofishing typically captures
more species with less size selectivity than other gear types (Hendricks et al. 1980),
electrofishing equipment is relatively compact and portable, and electrofishing is recommended
as a standard sampling method for coldwater fishes in streams (Bonar et al. 2009; J. Buckwalter,
ADF&G/Habitat Biologist II, personal communication, October 17, 2011).
Electrofishing settings will be determined in the field based on water quality conditions (e.g.,
conductivity) and professional judgment. Backpack electrofishing will be conducted by trained
staff consistent with established protocols and guidelines (e.g., NMFS 2000; Temple and
Pearsons 2007; Buckwalter et al. 2010; J. Buckwalter, ADF&G/Habitat Biologist II, personal
communication, October 17, 2011). If adult salmonids or aggregations of large (>300
millimeters [11.8 inches]) salmonids are encountered, electrofishing activities in the immediate
vicinity will cease, except to capture fish for species identification (Buckwalter et al. 2010).
Other fish sampling methods (e.g., fyke nets, minnow traps, snorkeling, etc.) may be used when
adult anadromous fish are present (or when habitat conditions are not suitable for electrofishing).
The length of stream habitat sampled at each crossing site will be directly proportional to the
stream channel’s wetted width. The linear distance of stream habitat sampled needs to be long
enough to provide a true representation of the fish species present but not so long that it becomes
more labor intensive than is necessary to meet the study’s objectives (Temple and Pearson 2007).
In general, large streams require longer sampling sections than smaller streams to assess
community structure (Temple and Pearsons 2007). Temple and Pearsons found that a sample
reach with a length between 27 and 31 wetted channel widths was the minimum sampling
distance required to detect 90 percent of the fish species present (2007). For small streams, such
as headwater streams, other studies report minimum sampling distances of 12 to 50 wetted
channel widths (Patton et al. 2000), 35 wetted channel widths (Lyons 1992), and 40 wetted
channel widths (Reynolds et al. 2003; Buckwalter et al. 2010). Recent analysis of data collected
Final Study Plan Aquatic Resources Study within the Access Alignment,
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by single-pass electrofishing using the 40 wetted channel width reach length found that species
richness was typically underestimated on intermediate (e.g., drains 200 square kilometers) and
mainstem (e.g., drains 1,500 square kilometers) streams in Alaska (as opposed to target
headwater (drains 50 square kilometers) streams (J. Buckwalter, ADF&G/Habitat Biologist II,
personal communication, October 17, 2011). Based on the study results described above and the
anticipated channel size for crossing surveys, AEA proposes to survey a stream length of 40
wetted channel widths, a minimum of 50 meters and up to a maximum of 400 meters (1,300 feet)
of stream length.
One or more alternative fish sampling methods may be used in stream habitats not suitable for
electrofishing and in lake habitats. Sampling may include the use of multi-mesh gillnets, baited
minnow traps, fyke nets, seine nets, and angling gear. The gear used at individual sampling
locations will be a function of habitat conditions encountered. Gear type specifications are as
follows:
• Gillnets used in lakes will be situated perpendicular to shore and fished at varying depths.
The team will deploy nets for a minimum of two hours and check nets frequently to
minimize potential fish mortality. To the extent possible, the team will sample multiple
locations throughout lakes, including around the inlet and outlet areas. If no fish are
captured within several hours, gear will be set overnight. The team will use a boat and/or
drysuits to deploy gear in offshore habitats.
• Minnow traps (also known as basket traps) will be baited with commercially processed
roe and secured to vegetation or substrate. Soak times are anticipated to be 90 minutes
(Bryant et al. 2000). These authors demonstrated that 45 percent of total catch can be
obtained from an initial soak of this duration.
• Fyke nets will be used with attached wings and detachable center leads with floats and
weighted line. Alternative fyke net sizes and designs may also be used depending on
conditions encountered.
• Beach seines may be used to target fish too small to be captured by traps or species that
typically are not susceptible to sampling with traps. The team may use a variety of sizes,
including a 1.2-meter (4-foot) by 6.1-meter (20-foot) black mesh beach seine with 6.4-
millimeter (0.25-inch) mesh. Beach seine sampling area will be recorded and involve a
single pass through the sample area.
• Angling gear will target larger fish in deeper portions of streams and lakes. A variety of
gear will be used.
Captured fish will be held in buckets and/or live wells until the sampling of each segment is
complete. Fish will be identified to species and counted. Up to 100 fish of each species
collected at each sampling location will be measured to the nearest millimeter to record fork or
total length as appropriate. Fish will be released within the sampling location once sampling
activities have ceased. Fish disposition (e.g., released, unintended mortality, voucher specimen,
injury) will be recorded for each fish handled. Data will be recorded on a standardized datasheet
or field computer form.
AEA will obtain a fish resource permit (FRP) from ADF&G prior to initiation of field sampling
activities. Sampling activities will be carried out in compliance with FRP stipulations. Any
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FERC Project No. 14241 Page 9.13-10 July 2013
deviations from the approved study plan will be communicated to ADF&G during or
immediately following sampling activities.
9.13.4.2.3 Data Analysis and Reporting
Data generated during this study will provide baseline data related to fish and aquatic habitat in
the vicinity of potential water body crossing locations associated with potential transportation
access alignments, transmission alignments, and construction areas. AEA will complete a
technical report that summarizes methods and results of the aquatic habitat characterization and
fish species assemblages in the study area.
Data generated during this study will be incorporated into the Project’s geospatially-referenced
relational database. Naming conventions of files and data fields, spatial resolution, and metadata
descriptions will meet the standards established for the Project. Use of the Project’s geospatial
database will also allow data specific to each stream crossing to be queried and readily accessible
for Project reporting. The database will be designed to create individual reports by crossing
location.
Fish capture data will be submitted to ADF&G per FRP requirements. Fish species assemblage
(composition and species richness) and distribution will be reported by sampling location and by
stream drainage or lake. Catch per unit effort (CPUE) will be determined by dividing the catch
(number of fish captured or observed) by the effort (e.g., sample time). To the extent possible,
data collected using different methods will be normalized so results can be appropriately
compared. CPUE will be determined for each species by location (e.g., stream reach sampled)
and gear type. CPUEs will be used to develop an index of relative abundance (as related to
sample time, not sample area) for each species captured at stream crossing sites.
9.13.5. Consistency with Generally Accepted Scientific Practice
Electrofishing, gillnets, seine nets, minnow traps, angling, fyke nets, and snorkel surveys are
commonly used methods for sampling fish populations (Murphy and Willis 1996; Backiel and
Welcomme 1980). Angling using single barbless lures or flies has become a common method
for capturing subject fish. These methods described herein have been developed in consultation
with the agencies and other licensing participants. All data collection efforts will follow state
guidelines and FRP permit stipulations.
9.13.6. Schedule
Table 9.13-1 shows the study activity timeline. AEA will begin this study by reviewing results of
the efforts currently underway to compile existing fisheries and aquatic habitat data. AEA
anticipates that the historic and more recent existing data on stream crossings will be available in
early 2013.
The field team will conduct fish surveys primarily during July and August 2013, at which time
fish should be well distributed throughout feeding or rearing habitats. It is possible that some
sampling efforts may start earlier and extend beyond August, such as those in lake habitats or
those associated with migration periods. Aquatic habitat surveys are typically conducted at low
flows. The timing of low-water events is not known for all crossing locations; in general, low
water during the open-water season may occur during fall months just prior to freeze up.
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FERC Project No. 14241 Page 9.13-11 July 2013
Aquatic habitat surveys will be conducted concurrent with fish sampling as conditions allow.
However, crossing locations may need to be visited more than once. For sites where no fish are
encountered on a first survey, a second survey during a different season of 2013 or in 2014 (if
conditions do not permit a second event in 2013) will be conducted to help confirm seasonal fish
use of habitat. As discussed in the methods section, additional surveys are anticipated in 2014 to
refine the alignments and/or fill in data gaps. The number of 2014 surveys that will be needed
cannot be determined until more information is available. Initial and Updated Study Reports
discussing actions to date will be issued within 1 and 2 years, respectively, of FERC’s Study
Plan Determination (i.e., February 1, 2013).
This study is dependant on well-defined access and transmission corridor alignment center lines
and construction area boundaries.
9.13.7. Relationship with Other Studies
The Aquatic Resources Study within the Access Alignment, Transmission Alignment, and
Construction Area (Access) Study will interrelate with at least five other AEA Project studies
(Figure 9.13-2). Potential transmission route options and construction areas as a component of
Project design will provide input for some of the relevant sampling locations. The
Characterization of Aquatic Habitat Study (Section 9.9), and the Upper River Fish Distribution
and Abundance Study (Section 9.5) will provide aquatic habitat and fish species presence data in
areas that overlap the potential corridors. This information may eliminate or reduce the data
collection needs for sites sampled on the respective alignments. The Fish Passage Barriers Study
(Section 9.12) will work cooperatively by providing physical locations of anadromous fish
passage barriers for tributary streams crossed by the respective alignments. The flow of
information into and out of the Access Study is anticipated to occur over the two-year study
period through an iterative process. As relevant data (described above) is collected, it will be
disseminated from the Fish Program to the Access Study team. To maximize communication
among the Fish Study Program, study leads will participate in regularly scheduled internal
meetings where preliminary data will be presented and implications to other studies discussed.
Two milestone deliveries are anticipated of data that has been subject to QA/QC procedures: (1)
the 2012 Upper River Fish Barrier Study will be incorporated in Q1 2013, and (2) video habitat
assessment data of Deadman Creek will be available in Q4 2013. The Access Study will also
provide findings as output information to the Upper River Fish Distribution and Abundance
Study (Section 9.5).
9.13.8. Level of Effort and Cost
This study will require that data be collected over at least two field seasons, primarily to
accommodate potential refinements in Project design. AEA anticipates that data will be
collected over a broader study area in 2013, for example, within the larger access corridors
shown in Figure 9.13-1. As elements of the Project are refined and specific crossing locations
are chosen, additional sites may need to be sampled and the collection of more detailed, site-
specific information may be necessary at selected crossing sites throughout the study area.
The study will require at least one part-time senior biologist as study lead and additional support
staff including multiple field biologists, a Geographic Information System (GIS) team, and
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FERC Project No. 14241 Page 9.13-12 July 2013
administrative staff. The 2013 field effort will require helicopter support for a minimum of two
field teams to collect fish and habitat data at potential water body crossings over the span of
approximately 30 field days. The remainder of the 2013 study effort will be office-based, with
data entry and quality assurance/quality control, analysis, GIS and database queries, and report
development. AEA anticipates that the study area within which additional data will need to be
collected in 2014 will be refined and therefore reduced. AEA estimates the 2014 field effort will
require helicopter support for potentially two field teams for up to 20 days. The remainder of the
2014 effort will be office-based.
The initial cost estimate for completion of the study objectives for all three access corridors is
roughly $600,000 for the two-year study period. However, costs could be reduced if the number
of proposed corridors is reduced and the alignment(s) is refined for year 2014.
9.13.9. Literature Cited
ADF&G (Alaska Department of Fish and Game). 2011. Catalog of waters important for
spawning, rearing or migration of anadromous fishes.
http://gis.sf.ADF&G.state.ak.us/FlexMaps/fishresroucemonitor.html?mode=awc
(accessed October 2011).
ADOT&PF (Alaska Department of Transportation and Public Facilities). 2012. Draft Watana
transportation access study, project no. 82002. Prepared for Alaska Department of
Transportation and Public Facilities, Fairbanks, Alaska, by HDR Alaska, Inc.,
Anchorage, Alaska 99503. June 2012 Draft.
AEA (Alaska Energy Authority). 2011. Pre-application document: Susitna-Watana
Hydroelectric Project, FERC Project No. 14241. December 29, 2011.
Backiel, T. and R. L. Welcomme. 1980. Guidelines for Sampling Fish in Inland Waters. EIFAC
1980 Technical Paper, (33): 176 p.
Bader, D., and R. Sinnott. 1989. South Central Anadromous waters catalog nomination form
for Granite Creek near the Parks Highway. AWC Stream No. 247-41-10200-2381-3600,
Anchorage, Alaska: Alaska Department of Fish and Game.
Barbour, M. T., J. Gerritsen, D. D. Snyder, and J. B. Stribling. 1999. Rapid bioassessment
protocols for use in streams and wadeable rivers: periphyton, benthic macroinvertebrates
and fish, 2nd edition. U. S. Environmental Protection Agency, Office of Water, EPA
Report No. 841-B-99-002, Washington, DC.
Bonar, S. A., W. A. Hubert, and D. W. Willis, editors. 2009. Standard methods for sampling
North American freshwater fishes. American Fisheries Society, Bethesda, Maryland.
Bryant M.D. 2000. Estimating fish populations by removal methods with minnow traps in
Southeast Alaska streams. North American Journal of Fisheries Management 20: 923-
930.
Buckwalter, J.D. 2011. Synopsis of ADF&G’s Upper Susitna drainage fish inventory, August
2011. November 22, 2011. ADF&G Division of Sport Fish, Anchorage, Alaska.
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Transmission Alignment, and Construction Area 9.13
Susitna-Watana Hydroelectric Project Alaska Energy Authority
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Buckwalter, J.D., J.M. Kirsch, and D.J. Reed. 2010. Fish inventory and anadromous
cataloging in the lower Yukon River drainage, 2008 Alaska Department of Fish and
Game, Fisheries Data Series No. 10-76 Anchorage.
Buckwalter, J., J. Wells, and J. Lazar. Fish Surveys Station #3826, Survey ID: FSS0310A02.
Odyssey Data Systems Fish Reource Monitor, Anchorage, Alaska: Alaska Department of
Fish and Game, Sport Fish Division, 2003.
Delaney, K., D. Crawford, L. Dugan, S. Hale, K Kuntz, B. Marshall, J. Mauney, J. Quinn, K.
Roth, P Suchanek, R. Sundet, and M. Stratton. 1981. Juvenile Anadromous Fish Study
on the Lower Susitna River. Alaska Department of Fish and Game, Susitna Hydro
Aquatic Studies, Anchorage, Alaska 200 pp.
Flotemersch, J, E., and K. A. Blocksom. 2005. Electrofishing in boatable rivers: does
sampling design affect bioassessment metrics? Environmental Monitoring and
Assessment 102:263-283.
Grenouillet, G, D. Pont, and C. Herisse. 2004. “Within-basin fish assemblage structure: the
relative influence of habitat versus stream spatial position on local species richness.”
Canadian Journal of Fisheries and Aquatic Sciences 61:93-102 (2004), doi:
10.1139/F03-145.
HDR Alaska, Inc. 2011. Aquatic resources data gap analysis. Draft. Prepared for Alaska Energy Authority. July 20, 2011.
Hendricks, M. L., C. H. Hocutt, and J. R. Stauffer, Jr. 1980. Monitoring of fish in lotic
habitats. In Biological monitoring of fish. C. H. Hocutt and J. R. Stauffer, Jr., editors.
D.C. Heath, Lexington, Massachusetts. pp. 205–31.
Hughes, R, M., P. R. Kaufmann, A. T. Herlihy, S. S. Intelmann, S. C. Corbett, M. C.
Arbogast, and R. C. Hjort. 2002. Electrofishing distance needed to estimate fish
species richness in Medium Oregon rivers. North American Journal of Fisheries
Management 22: 1229–1240.
Lyons, J. 1992. The length of stream to sample with a towed electrofishing unit when fish
species richness is estimated. North American Journal of Fisheries Management 12:198-
203.
Murphy, B.R. and D.W.E. Willis. 1996. Fisheries Techniques. American Fisheries Society,
Bethesda, Maryland. Pp. 732.
National Marine Fisheries Service (NMFS). 2000. Guidelines for electrofishing waters
containing salmonids listed under the Endangered Species Act.
O’Doherty 2010. ADF&G Fish Passage Program: Summary of Existing Inventory and
Assessment Data and Gap Analysis, Sept 2009. Alaska Department of Fish ad Game,
Special Publication No. 10-17, Anchorage.
Patton, T. M., W. A. Hubert, F. J. Rahel, and K. G. Gerow. 2000. Effort needed to estimate
species richness in small streams on the Great Plains in Wyoming. North American
Journal of Fisheries Management 20:394–398.
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Reynolds, J. B. 1996. Electrofishing. In Fisheries techniques, 2nd edition. Murphy, B. R.,
and D. W. Willis, editors. American Fisheries Society, Bethesda, Maryland. pp. 221-
53.
Reynolds, L., A. T. Herlihy, P. R. Kaufman, S. V. Gregory, and R. M. Hughes. 2003.
Electrofishing effort requirements for assessing species richness and biotic integrity in
Western Oregon Streams. North American Journal of Fisheries Management 23:450-
461.
Rosgen, D. L. 1994. A classification of natural rivers. Catena 22:169-199.
Schmidt, D, C. Estes, D. Crawford, and D. Vincent-Lang. 1984. Access and transmission
corridor aquatic investigations (July—October 1983), Report No. 4. Susitna Hydro
Aquatic Studies. APA Doc No. 2049. Alaska Department of Fish and Game,
Anchorage, Alaska.
Simon, T. P. and R. E. Sanders. 1999. Applying an index of biotic integrity based on great
river fish communities: considerations in sampling and interpretation. In Assessing
sustainability and biological integrity of water resources using fish communities. T. P.
Simon, editor. CRC Press, Boca Raton, Florida. pp. 475–505.
Temple, G. M., and T. N. Pearsons. 2007. Electrofishing: backpack and drift boat. Pages 95–
132 in D. H. Johnson, B. M. Shrier, J. S. O’Neal, J. A. Knutzen, X. Augerot, T. A.
O’Neil, and T. N. Pearsons. Salmonid field protocols handbook—techniques for
assessing status and trends in salmon and trout populations. American Fisheries Society,
Bethesda, Maryland.
USFS (U.S. Forest Service). 2001. Chapter 20—Fish and aquatic stream habitat survey. FSH
2090-Aquatic Habitat Management Handbook (R-10 Amendment 2090.21-2001-1).
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9.13.10. Tables
Table 9.13-1. Preliminary schedule for the Aquatic Resources Study within the access alignment, transmission alignment,
and construction area.
Activity 2013 2014 2015
1 Q 2 Q 3 Q 4 Q 1 Q 2 Q 3 Q 4 Q 1 Q
Existing Information Summary
Fish Distribution Surveys
Aquatic Habitat Surveys
Data Analysis and Reporting Δ ▲
Legend:
Planned Activity
Follow- up activity (as needed)
Δ Initial Study Report
▲ Updated Study Report
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9.13.11. Figures
Figure 9.13-1. Study area for aquatic resources in the potential access and/or transmission alignment corridors.
FINAL STUDY PLAN Aquatic Resources Study within the Access Alignment,
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Figure 9.13-2. Study interdependencies for Aquatic Resources Study within the access alignment, transmission
alignment, and construction area.